lama::StorageIO< T > Class Template Reference

#include <StorageIO.hpp>

Inheritance diagram for lama::StorageIO< T >:

Public Types
typedef T	ValueType
	This is the type of the matrix values.
Static Public Member Functions
static void	writeCSRToFile (const PartitionId size, const PartitionId rank, const LAMAArray< IndexType > &csrIA, const IndexType numColumns, const LAMAArray< IndexType > &csrJA, const LAMAArray< ValueType > &csrValues, const std::string &fileName, const File::FileType &fileType, const File::DataType &dataType, const File::IndexDataType indexDataTypeIA, const File::IndexDataType indexDataTypeJA)
	General version of writing CSR storage to a file.
static void	writeCSRToFormattedFile (const LAMAArray< IndexType > &csrIA, const LAMAArray< IndexType > &csrJA, const LAMAArray< ValueType > &csrValues, const std::string &fileName)
static void	writeCSRToBinaryFile (const LAMAArray< IndexType > &csrIA, const LAMAArray< IndexType > &csrJA, const LAMAArray< ValueType > &csrValues, const std::string &fileName, const long indexDataTypeSizeIA, const long indexDataTypeSizeJA, const long dataTypeSize)
static void	writeCSRToXDRFile (const LAMAArray< IndexType > &csrIA, const LAMAArray< IndexType > &csrJA, const LAMAArray< ValueType > &csrValues, const std::string &fileName, const long indexDataTypeSizeIA, const long indexDataTypeSizeJA, const long dataTypeSize)
static void	writeCSRToMMFile (const LAMAArray< IndexType > &csrIA, const IndexType numColumns, const LAMAArray< IndexType > &csrJA, const LAMAArray< ValueType > &csrValues, const std::string &fileName, const File::DataType &dataType)
static void	readCSRFromFile (LAMAArray< IndexType > &csrIA, IndexType &numColumns, LAMAArray< IndexType > &csrJA, LAMAArray< ValueType > &csrValues, const std::string &fileName)
static void	readCSRFromFormattedFile (LAMAArray< IndexType > &csrIA, LAMAArray< IndexType > &csrJA, LAMAArray< ValueType > &csrValues, const std::string &fileName, const IndexType numRows)
static void	readCSRFromBinaryFile (LAMAArray< IndexType > &csrIA, LAMAArray< IndexType > &csrJA, LAMAArray< ValueType > &csrValues, const std::string &fileName, const IndexType numRows)
	Reading storage data from a binary file.
static void	readCSRFromXDRFile (LAMAArray< IndexType > &csrIA, LAMAArray< IndexType > &csrJA, LAMAArray< ValueType > &csrValues, const std::string &fileName, const IndexType numRows)
static void	readCSRFromMMFile (LAMAArray< IndexType > &csrIA, IndexType &numColumns, LAMAArray< IndexType > &csrJA, LAMAArray< ValueType > &csrValues, const std::string &fileName)
static size_t	getDataTypeSize (const File::DataType dataType)
static void	writeCSRHeader (const IndexType numRows, const IndexType numValues, const File::FileType &fileType, const std::string &fileName, const PartitionId size, const PartitionId rank)
	This method writes a header file for a CSR storage.
static void	readCSRHeader (IndexType &numRows, IndexType &numColumns, IndexType &numValues, PartitionId &size, PartitionId &rank, File::FileType &fileType, const std::string &fileName)
static size_t	getIndexDataTypeSize (const File::IndexDataType indexDataType)
Protected Member Functions
	LAMA_LOG_DECL_STATIC_LOGGER (logger)
	logger for Storage IO

template<typename T>
class lama::StorageIO< T >

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Member Typedef Documentation

template<typename T >

typedef T lama::StorageIO< T >::ValueType

This is the type of the matrix values.

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Member Function Documentation

template<typename ValueType >

size_t lama::StorageIO< ValueType >::getDataTypeSize

(

const File::DataType

dataType

)

[static]

References lama::File::COMPLEX, lama::File::DOUBLE, lama::File::FLOAT, lama::File::INTEGER, lama::File::INTERNAL, LAMA_THROWEXCEPTION, and lama::File::PATTERN.

size_t lama::_StorageIO::getIndexDataTypeSize

(

const File::IndexDataType

indexDataType

)

[static, inherited]

References lama::File::INT, LAMA_THROWEXCEPTION, and lama::File::LONG.

lama::_StorageIO::LAMA_LOG_DECL_STATIC_LOGGER

(

logger

)

[protected, inherited]

logger for Storage IO

template<typename ValueType >

void lama::StorageIO< ValueType >::readCSRFromBinaryFile	(	LAMAArray< IndexType > &	csrIA,
		LAMAArray< IndexType > &	csrJA,
		LAMAArray< ValueType > &	csrValues,
		const std::string &	fileName,
		const IndexType	numRows
	)		[static]

Reading storage data from a binary file.

Be careful: no implicit conversions are supported here, so the binary file must contain data of exact the same type as needed.

References lama::WriteAccess< T >::get(), and lama::readBinaryData().

template<typename ValueType >

void lama::StorageIO< ValueType >::readCSRFromFile	(	LAMAArray< IndexType > &	csrIA,
		IndexType &	numColumns,
		LAMAArray< IndexType > &	csrJA,
		LAMAArray< ValueType > &	csrValues,
		const std::string &	fileName
	)		[static]

References lama::File::BINARY, lama::File::FORMATTED, LAMA_THROWEXCEPTION, and lama::File::XDR.

template<typename ValueType >

void lama::StorageIO< ValueType >::readCSRFromFormattedFile	(	LAMAArray< IndexType > &	csrIA,
		LAMAArray< IndexType > &	csrJA,
		LAMAArray< ValueType > &	csrValues,
		const std::string &	fileName,
		const IndexType	numRows
	)		[static]

References LAMA_THROWEXCEPTION.

template<typename ValueType >

void lama::StorageIO< ValueType >::readCSRFromMMFile	(	LAMAArray< IndexType > &	csrIA,
		IndexType &	numColumns,
		LAMAArray< IndexType > &	csrJA,
		LAMAArray< ValueType > &	csrValues,
		const std::string &	fileName
	)		[static]

References lama::WriteAccess< T >::get(), getErrorString(), lama::MatrixValue< ValueType >::i, lama::MatrixValue< ValueType >::j, LAMA_THROWEXCEPTION, mm_is_complex, mm_is_matrix, mm_is_pattern, mm_is_skew, mm_is_sparse, mm_is_symmetric, mm_read_banner(), mm_read_mtx_crd_size(), lama::OpenMPCSRUtils::sortRowElements(), and lama::MatrixValue< ValueType >::v.

template<typename ValueType >

void lama::StorageIO< ValueType >::readCSRFromXDRFile	(	LAMAArray< IndexType > &	csrIA,
		LAMAArray< IndexType > &	csrJA,
		LAMAArray< ValueType > &	csrValues,
		const std::string &	fileName,
		const IndexType	numRows
	)		[static]

References lama::WriteAccess< T >::get(), LAMA_ASSERT_EQUAL_ERROR, LAMA_THROWEXCEPTION, and lama::readData().

void lama::_StorageIO::readCSRHeader	(	IndexType &	numRows,
		IndexType &	numColumns,
		IndexType &	numValues,
		PartitionId &	size,
		PartitionId &	rank,
		File::FileType &	fileType,
		const std::string &	fileName
	)		[static, inherited]

References lama::File::BINARY, lama::File::FORMATTED, LAMA_THROWEXCEPTION, lama::_StorageIO::mIversion, and lama::File::XDR.

void lama::_StorageIO::writeCSRHeader	(	const IndexType	numRows,
		const IndexType	numValues,
		const File::FileType &	fileType,
		const std::string &	fileName,
		const PartitionId	size,
		const PartitionId	rank
	)		[static, inherited]

This method writes a header file for a CSR storage.

Parameters:

[in]	numRows	is number of rows of the storage
[in]	numValues	is number of values of the storage
[in]	fileType	specifies the type of representation (e.g. binary)
[in]	filename	is the name of the header file to write
[in]	size	stands for number of partitions, is CSR storage is part of a distributed matrix
[in]	rank	stands for the rank of the partition.

Note: for distributed CSR matrices each partition has its own header file. #row and #non-zero values are the values for each local part.

References lama::File::BINARY, lama::File::FORMATTED, LAMA_THROWEXCEPTION, lama::_StorageIO::mIversion, VERSION_ID, and lama::File::XDR.

template<typename ValueType >

void lama::StorageIO< ValueType >::writeCSRToBinaryFile	(	const LAMAArray< IndexType > &	csrIA,
		const LAMAArray< IndexType > &	csrJA,
		const LAMAArray< ValueType > &	csrValues,
		const std::string &	fileName,
		const long	indexDataTypeSizeIA,
		const long	indexDataTypeSizeJA,
		const long	dataTypeSize
	)		[static]

References lama::ReadAccess< T >::get(), LAMA_THROWEXCEPTION, and lama::_LAMAArray::size().

template<typename ValueType >

void lama::StorageIO< ValueType >::writeCSRToFile	(	const PartitionId	size,
		const PartitionId	rank,
		const LAMAArray< IndexType > &	csrIA,
		const IndexType	numColumns,
		const LAMAArray< IndexType > &	csrJA,
		const LAMAArray< ValueType > &	csrValues,
		const std::string &	fileName,
		const File::FileType &	fileType,
		const File::DataType &	dataType,
		const File::IndexDataType	indexDataTypeIA,
		const File::IndexDataType	indexDataTypeJA
	)		[static]

General version of writing CSR storage to a file.

Parameters:

[in]	size,rank	header information in case of distributed matrices
[in]	csrIA,csrJA,csrValues	are the CSR arrays
[in]	numColumns	number of (global) columns
[in]	fileName	name of output file
[in]	fileType	type of file
[in]	dataType	specifies precision of real values
[in]	indexDataTypeIA	specifies precision of IA array
[in]	indexDataTypeJA	specifies precision of JA array

References lama::File::BINARY, lama::File::FORMATTED, LAMA_THROWEXCEPTION, lama::File::MATRIX_MARKET, lama::_LAMAArray::size(), and lama::File::XDR.

template<typename ValueType >

void lama::StorageIO< ValueType >::writeCSRToFormattedFile	(	const LAMAArray< IndexType > &	csrIA,
		const LAMAArray< IndexType > &	csrJA,
		const LAMAArray< ValueType > &	csrValues,
		const std::string &	fileName
	)		[static]

References lama::_LAMAArray::size().

template<typename ValueType >

void lama::StorageIO< ValueType >::writeCSRToMMFile	(	const LAMAArray< IndexType > &	csrIA,
		const IndexType	numColumns,
		const LAMAArray< IndexType > &	csrJA,
		const LAMAArray< ValueType > &	csrValues,
		const std::string &	fileName,
		const File::DataType &	dataType
	)		[static]

References lama::File::COMPLEX, lama::File::DOUBLE, lama::File::FLOAT, lama::File::INTEGER, lama::File::INTERNAL, LAMA_THROWEXCEPTION, mm_initialize_typecode, mm_set_complex, mm_set_integer, mm_set_matrix, mm_set_pattern, mm_set_real, mm_set_sparse, mm_write_banner(), mm_write_mtx_crd_size(), lama::File::PATTERN, and lama::_LAMAArray::size().

template<typename ValueType >

void lama::StorageIO< ValueType >::writeCSRToXDRFile	(	const LAMAArray< IndexType > &	csrIA,
		const LAMAArray< IndexType > &	csrJA,
		const LAMAArray< ValueType > &	csrValues,
		const std::string &	fileName,
		const long	indexDataTypeSizeIA,
		const long	indexDataTypeSizeJA,
		const long	dataTypeSize
	)		[static]

References lama::ReadAccess< T >::get(), lama::_LAMAArray::size(), and lama::XDRFileStream::write().

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The documentation for this class was generated from the following files:

• /home/brandes/workspace/LAMA/src/lama/StorageIO.hpp
• /home/brandes/workspace/LAMA/src/lama/StorageIO.cpp